cross-species

There are 2 repositories under cross-species topic.

• XingyanLiu / CAME

  Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.

  scrna-seqcross-speciesheterogeneous-neural-network
  Language:Python 12

• nhihin / aespca

  Code to reproduce Adaptive elastic-net sparse PCA for robust cross-species, cross-platform analysis of complex gene expression data in Alzheimer’s disease (Hin et al.)

  aespcaalzheimers-diseasebioinformaticscross-platformcross-speciesmatrix-factorizationrrna-seqtranscriptome
  Language:R 1

• Orthogonal-Research-Lab / Periodicity-in-the-Embryo

  computational-biologycross-speciesdevelopmental-biologytempo-regulationtheoretical-biology
  1

• anaellle / CrossSpeciesIC

  Cross-species integration of single cell RNA-seq data from the primary motor cortex between human, mouse and drosophila using expiMap and SATURN

  cross-speciesintegrationscrna-seq
  Language:Jupyter Notebook 0

• Emad-COMBINE-lab / intrepppid

  Incorporating Triplet Error for Predicting PPIs using Deep Learning

  computational-biologycross-speciesdeep-learningprotein-protein-interactionprotein-protein-interactions
  Language:Python 0

• fhaive / metanalysis_toxicogenomic_data

  A gene regulation model reveals an ancestral adaptation response to particulate exposure triggered by nanomaterials

  cross-speciesepigeneticsnanomaterialstoxicogenomicstranscriptomicsnanosafety
  Language:R 0

• ytanaka-bio / cisMultiDeep

  Workflow to identify functional cis-regulatory regions for each annotated cell type

  cis-regulatory-elementscross-speciesdeep-learningenhancershi-cpromotersshapsingle-cell-atac-seqsingle-cell-methylationsingle-cell-multiomicssingle-cell-rna-seq
  Language:Python 0

• altingia / mimeo

  Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.

  transposonscross-specieshgt
  Language:Python