oliviergimenez

bayesian-stats-with-R

Material for a workshop on Bayesian stats with R

banana-book

Repo for a book on Bayesian capture-recapture w/ HMMs

oliviergimenez.github.io

My site, built with Hugo and Blogdown, and hosted on Github pages. Built and deployed with GitHub Actions from https://github.com/oliviergimenez/my_website repo.

popdyn-workshop

Website of workshop Quantitative Methods for Population Dynamics in R

R2ucare

R package to perform goodness-of-fit tests for capture-recapture models (and various manipulations)

appendix_capturerecapture_review

Analyses, R code and data for review of 2009-2019 research on capture-recapture

bayesian-hmm-cr-workshop-valencia

Material for a workshop on Bayesian analysis of capture-recapture data with hidden Markov models and Nimble

fitODEnimble

Fit ODEs to data with Nimble

lynx-id

Re-identify individuals and estimate population density from eurasian lynx population by Deep Learning and Spatial Capture Recapture (Python & R)

occupancy-crash-course

NETDEM-workshop-survival-nimble

This repository holds the source materials used for a working group/symposium on capture-recapture models and social networks, and an introduction to capture-recapture models in nimble to estimate demographic parameters.

pyrenean-brown-bear-abundance

Code and data for the estimation of Pyrenean brown bear abundance

topic-isec2022

curated-list-HMM-apps

human-tursiops-twospeciesoccupancy

mecastat-in-julia

Julia code to fit mechanistic-statistical models w/ Bayes and MCMC

my_website

Source code of my website https://oliviergimenez.github.io/.

otterconnect

website of the otterconnect project

cloudwego.github.io

Website for CloudWeGo

flex-matrix

flexdashboard/shiny matrix model

hair_website

Source code of Hair website https://human-animal-interactions.github.io/

HMM_with_TMB

A gentle tutorial of accelerated parameter and confidence interval estimation for Hidden Markov Models using Template Model Builder

hugo-minimal-theme

LaPreprint

📝 A nicely formatted LaTeX preprint template

lynxharvest_andren2020

occupancy-workshop

playing-with-RTMB

ReID-Hippocampe

scr-connectivity

Assessing connectivity with spatial capture-recapture models and package oSCR

SiMRiv

Individual-based simulation of multistate movements in rivers, heterogeneous and homogeneous spaces incorporating local landscape bias in R