fitness-landscape

There are 0 repository under fitness-landscape topic.

yoavram / UnderTheRug
Repo for "Evolution on rugged adaptive landscapes"
evolution-simulation evolution fitness-landscape
Language:Jupyter Notebook 11
westlake-repl / ProteinLM-TDG2-Mutation
Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing
base-editing crispr-cas9 enzyme fitness-landscape large-language llm mutation protein protein-engineering direct-evoluation direct-evolution large-langage-models
Language:Jupyter Notebook 10
louisgt / SodaPop
A tool for multiscale forward-time simulation of protein evolution.
simulation molecular-evolution proteins forward-simulation population-genetics population-dynamics fitness-landscape coevolution deep-mutational-scanning
Language:C++ 7
lettier / bbautotune
Blender/Bullet automatic parameter tuning/learning.
blender thesis blender3d genetic-algorithm evolutionary-algorithms evolutionary-algorithm neural-network neural-networks simulation bullet-physics bullet 3d fitness-landscape evolution evolutionary-computation evolution-simulation evolutionary-strategy physics-engine physics physics-simulation
Language:TeX 4
thomas-vogel / sapienzdiv-ssbse19
SAPIENZ^div @ SSBSE 2019: Does Diversity Improve the Test Suite Generation for Mobile Applications?
android app testing test-case-generation evolutionary-algorithms diversity fitness-landscape-analysis fitness-landscape ssbse sbse
Language:Python 4
thomasWeise / BBDOB_W_Model
The W-Model, a tunable Black-Box Discrete Optimization Benchmarking (BB-DOB) problem, implemented for the BB-DOB@GECCO Workshop.
black-box-benchmarking discrete-mathematics combinatorial-optimization epistasis non-separability neutrality multi-objectivity ruggedness fitness-landscape benchmark benchmark-problem deterministic noise experiments local-search hill-climber evolutionary-algorithm random-walk multi-objective
Language:Java 3
ahmedaq / PV-vp1
Software for inferring the intrinsic fitness landscape of poliovirus capsid protein (vp1) and comparing it with that of analogous proteins in HIV
poliovirus fitness-landscape landscape-peaks-analysis maximum-entropy-model monte-carlo-simulation zero-temperature-monte-carlo polio-outbreaks evolution evolutionary-constraints landscape-comparison hiv hiv-gag hiv-gp160 hiv-envelope-glycoproteins vp1 geographical-analysis temporal-analysis computational-biology statistical-physics
Language:MATLAB 1
ayushkarnawat / profit
Exploring evolutionary protein fitness landscapes
protein-structure protein-sequences fitness-landscape protein-evolution nlp-machine-learning pytorch bayesian-inference semi-supervised-learning optimization gradient-free-optimization active-learning
Language:Python 1
marcosdg / ppsn-2018
Bridging Elementary Landscapes and a Geometric Theory of Evolutionary Algorithms: First Steps (PPSN 2018)
evolutionary-computation evolutionary-algorithms fitness-landscape convex-optimization graph-theory nodal-sets eigenvectors mathematica hypergraphs
Language:Mathematica 1
rrrlw / fitness
Software library providing fitness landscape functionality in R.
fitness-landscape r r-package
Language:R 1
cbg-ethz / covvfit
Fitness estimates of SARS-CoV-2 variants
bayesian-statistics epidemiology fitness-landscape sars-cov-2
Language:Python