reference-free

There are 0 repository under reference-free topic.

ZJUFanLab / scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
annotation cell-type-classification deep-learning gnn graph-neural-network reference-free scrna-seq single-cell transcriptomics
Language:Python 99
aljpetri / isONform
De novo construction of isoforms from long-read data
annotation-free bioinformatics-tool oxford-nanopore pacbio-iso-seq reference-free transcript-reconstruction transcriptomics
Language:Python 16
ZJUFanLab / scDeepSort_performance_comparison
The source code and results for different methods on annotating external testing datsets of human and mouse.
annotation cell-type-classification deep-learning gnn graph-neural-network reference-free scrna-seq single-cell transcriptomics
Language:R 11
edgardomortiz / sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
bam consensus fasta pileup reference-free sam
Language:Python 10
tobiasrausch / rdxon
Reference-free FASTQ filter for rare germline and somatic variants
cancer-genomics k-mer pan-genome rare-disease reference-free sequencing variant-calling
Language:C++ 5
jfjlaros / HUMID
HUMID: reference free FastQ deduplication
clustering deduplication edit-distance fastq hamming-distance reference-free umi
Language:C++ 4
metagenopolis / ESKRIM
ESKRIM is a reference-free tool that compares microbial richness in shotgun metagenomic samples by counting k-mers
metagenomics reference-free alpha-diversity
Language:Python 4
namini94 / MUSTANG
MUSTANG: reference-free MUlti-sample Spatial Transcriptomics data ANalysis with cross-sample transcriptional similarity Guidance
cell-type-deconvolution multisample reference-free spatial-transcriptomics
Language:Python 4
aljpetri / isONclust3
De novo clustering of long transcript reads into genes
annotation-free bioinformatics clustering oxford-nanopore pacbio-iso-seq reference-free transcriptomics
Language:Rust 3
paujedynak / reffree_cell_mix_tutorial
Example of an estimation of cell-type proportions using reference-free method (RefFreeEWAS)
cell-heterogeneity dna-methylation matrix-decomposition reference-free reffreeewas
3

reference-free

ZJUFanLab / scDeepSort

aljpetri / isONform

ZJUFanLab / scDeepSort_performance_comparison

edgardomortiz / sam2consensus

tobiasrausch / rdxon

jfjlaros / HUMID

metagenopolis / ESKRIM

namini94 / MUSTANG

aljpetri / isONclust3

paujedynak / reffree_cell_mix_tutorial