reference-free

There are 0 repository under reference-free topic.

ZJUFanLab / scDeepSort
Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network
annotation cell-type-classification deep-learning gnn graph-neural-network reference-free scrna-seq single-cell transcriptomics
Language:Python 93
ZJUFanLab / scDeepSort_performance_comparison
The source code and results for different methods on annotating external testing datsets of human and mouse.
annotation cell-type-classification deep-learning gnn graph-neural-network reference-free scrna-seq single-cell transcriptomics
Language:R 11
edgardomortiz / sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
bam consensus fasta pileup reference-free sam
Language:Python 10
tobiasrausch / rdxon
Reference-free FASTQ filter for rare germline and somatic variants
cancer-genomics k-mer pan-genome rare-disease reference-free sequencing variant-calling
Language:C++ 5
paujedynak / reffree_cell_mix_tutorial
Example of an estimation of cell-type proportions using reference-free method (RefFreeEWAS)
reffreeewas matrix-decomposition reference-free cell-heterogeneity dna-methylation
3
jfjlaros / HUMID
HUMID: reference free FastQ deduplication
clustering deduplication edit-distance fastq hamming-distance reference-free umi
Language:C++ 2
namini94 / MUSTANG
MUSTANG: reference-free MUlti-sample Spatial Transcriptomics data ANalysis with cross-sample transcriptional similarity Guidance
cell-type-deconvolution multisample reference-free spatial-transcriptomics
Language:Python 1

reference-free

ZJUFanLab / scDeepSort

ZJUFanLab / scDeepSort_performance_comparison

edgardomortiz / sam2consensus

tobiasrausch / rdxon

paujedynak / reffree_cell_mix_tutorial

jfjlaros / HUMID

namini94 / MUSTANG