phylodynamics

There are 0 repository under phylodynamics topic.

• evolbioinfo / phylodeep

  PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.

  deep-learningphylodynamics
  Language:Python 18

• mccoy-devs / mccoy

  The McCoy phylodynamics workflow

  phylodynamicssnakemakeworkflow
  Language:HTML 4

• mrc-ide / sarscov2-b.1.1.7

  Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)

  sarscov2englandtransmissioninsightsepidemiologygenetic-datapaperphylodynamicsbayesian-inference
  Language:HTML 4

• josegcpa / clonal_dynamics

  Code repository for the longitudinal and phylodynamic analysis in "The longitudinal dynamics and natural history of clonal haematopoiesis"

  modellingphylodynamics
  Language:R 3

• kgustafIDM / disease-mobility

  ebolageneticsphylodynamics
  Language:MATLAB 1

• laduplessis / beast2_bdskysa_ebov_example

  Example for BEAST v2.5 paper

  bdskysampled-ancestorbayesian-model-averagingphylodynamicsebola-outbreakmcmcbeast2
  Language:Python 1

• maxbiostat / FMDV_AMERICA

  Tracking the spread of Foot-and-Mouth Disease virus in South America

  foot-and-mouthdiseasevirusphylodynamicsphylogeography
  Language:Jupyter Notebook 1

• maxbiostat / PhD_Thesis

  My PhD Thesis - Institute of Evolutionary Biology, University of Edinburgh, 2018

  biostatisticsevolutionmcmcphylodynamicsvirus
  Language:TeX 1

• ViennaRNA / CHIKV

  Nextstrain community build 'Molecular epidemiology of Chikungunya virus'

  bioinformaticschikungunyaepidemiologyphylodynamicsphylogeographyvirology
  1

• ViennaRNA / VEEnext

  Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'

  bioinformaticsepidemiologyphylodynamicsphylogeneticsphylogeographyvirologyvirusvenezuelan-equine-encephalitis-virus
  1

• NIH-BIGVI-PAKISTAN / ncov

  Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan

  phylogeneticsphylodynamicspakistan-analysisnextstrain-ncovphylogenetic-dataphylogeography
  0

• ktmeaton / plague-global-phylo-paper

  Plague Global Phylogeny Manuscript

  plaguephylogeneticsphylodynamicsphylogeographypopulation-structure
  Language:HTML

• maxbiostat / second_year_poster

  my second year poster for the Graduate School Poster Day 2016

  phylodynamicsposterebolageneralised-linear-models
  Language:TeX

• philsf / trepid_paper

  agent-based-modelingagent-based-simulationphylogeneticsphylodynamicspopulationpopulation-geneticsmolecular-evolution
  Language:TeX

• Wytamma / pybeast

  beast2cliphylodynamicsphylogenetics
  Language:Python