kingaa

pomp

R package for statistical inference using partially observed Markov processes

sbied

Simulation-based Inference for Epidemiological Dynamics

ouch

Ornstein-Uhlenbeck models for phylogenetic comparative hypotheses

R_Tutorial

A Tutorial Introduction to R

subplex

Subplex Optimization Algorithm

mathematica-addons

Some useful Mathematica add-on packages

kingaa.github.io

Aaron A. King

short-course

Model-based Inference in Ecology and Epidemiology

covid-19-data

An ongoing repository of data on coronavirus cases and deaths in the U.S.

phylopomp

R package for phylodynamics

thid

Theory of Infectious Disease Seminar

clim-dis

Materials for ICTP Workshop on Mathematical Models of Climate Variability, Environmental Change and Infectious Diseases

genpomp

POMP models for genetic data

serrapilheira

Training Program in Quantitative Ecology

circumstance

a helper package for pomp

gravity

Supporting material for Bjørnstad, Viboud, Grenfell, King (2020) "Comparison of alternative models of human movement and the spread of disease"

massachusetts-honeymoon

Supporting material for the paper "The impact of past vaccination coverage and immunity on pertussis resurgence", M. Domenech de Cellès, F. M. G. Magpantay, A. A. King, and P. Rohani, Science Translational Medicine 10(434): eaaj1748, 2018. https://doi.org/10.1126/scitranslmed.aaj1748

aakmisc

Miscellany

COVID-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

layouts.jabref.org

Collection of .layout files

malaria-rbc-dynamics

Supporting code and data for Frontiers MS "Red blood cell dynamics during malaria infection violate the assumptions of mathematical models of infection dynamics"

measles_competing_risks

Modelling measles spatial spread with a competing-risks framework

mpifarm

An R package for parallel computation using MPI

panelPomp

R package for statistical inference using panelPOMPs (panel Partially Observed Markov Processes)

pomp-practice

tao

the Great Tao Package

vissched

Visit-day Scheduler