Luke Zappia's repositories
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
twitter-stats
Analysis of Twitter hashtags
chezmoi-dotfiles
Dotfiles repository for use with chezmoi
gh-dashboard
Dashboard showing the status of my main GitHub repos, based on https://github.com/gadenbuie/status.
lazappi.id.au
My personal website
tidydirectory
A Python script for tidying directories
anndata
Annotated data.
biobox
🌱📦 A collection of bioinformatics tools for working with sequence data.
cz-benchmarks
cz-benchmarks is a package for standardized evaluation and comparison of machine learning models for biological applications.
funkyheatmap
Visualising data frames as funky heatmaps đź“Š
git-cleanup
A script for cleaning up git repositories
lamindb
A data framework for biology.
laminr
Lamin's R SDK.
nf-core_rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
openapi-generator
OpenAPI Generator allows generation of API client libraries (SDK generation), server stubs, documentation and configuration automatically given an OpenAPI Spec (v2, v3)
reticulate
R Interface to Python
scdownstream
A single cell transcriptomics pipeline for QC, integration and making the data presentable
scrnaseq
Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-droplet detection
SingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
task_dimensionality_reduction_copy
A copy of the dimensionality reduction task for testing
task_template
This repo is a template to create a new task that has the correct files and structure needed to start a new task.
website
Website hosted at https://openproblems.bio