Health Data Research UK

datasets

HDR UK Gateway Datasets

schemata

HDR UK Schemas

gateway-web

HDR UK Gateway Web

papers

Extract of publications that mention HDR-UK

gateway-api

HDR UK Gateway API

CaRROT-CDM

hutch

Former repo for Hutch

EHRtemporalVariability

DaCVaP

openpathology-web

Openpathology website

schemata-2

synthea

Synthetic Patient Population Simulator

bedtools2

bedtools - the swiss army knife for genome arithmetic

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

CaRROT-Docs

Documentation

fma-custodian-test-server

A test BE server for federated metadata automation

gateway-2-integrations-testing

gateway-web-components

Web Components for HDRUK

MedCAT

Medical Concept Annotation Tool

MedCATservice

Running MedCAT as a RESTful web service

MedCATweb

This repo provides a simple interface to inspect, improve and add concepts to biomedical NER+L model (e.g. MedCAT) and a further interface for research specific training data collection

PGS_Catalog

An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.

py-carrot-mapper

RDMP

Research Data Management Platform (RDMP) is an open source application for the loading,linking,anonymisation and extraction of datasets stored in relational databases.

ringbp

tools

HDR UK Gateway Tools

tpot

A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.

traser-mapping-files

UK-OMOP

A directory of OMOP data sets in the UK

uprn-match