There are 0 repository under multiplexed-imaging topic.
Technology-invariant pipeline for spatial-omics analysis (Xenium / MERSCOPE / CosMx / PhenoCycler / MACSima / Hyperion) that scales to millions of cells
astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
Probabilistic topic model for identifying cellular micro-environments.
MIAAIM: Multi-omics Image Alignment and Analysis by Information Manifolds
High-dimensional image preparation module for MIAAIM
High-dimensional image registration workflow as part of the MIAAIM framework. Hdi-reg is written in Python, and utilizes the Elastix library for computations.
General importing and utility functions for high-dimensional image data
Multi-omics image alignment and analysis by information manifolds (MIAAIM)
Perform RESTORE normalization on multiplexed imaging data.
A workflow designed to perform multiplexed image analysis, specialising in (but not limited to) analysis of metal distribution in LA-ICP-TOFMS data.