bioformats

There are 0 repository under bioformats topic.

nf-core / mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
nextflow nf-core pipeline workflow microscopy multiplexed-imaging spatial tma bioformats ome-tiff registration segmentation stitching image-analysis image-processing single-cell
Language:Nextflow 25
andreped / vsi2tif
Simple tool for converting WSIs from cellSens VSI to pyramidal TIFF
bftools bioformats cellsens converter cucim fast generic olympus openslide pyfast pyramidal pyvips tif tiff vips vsi wsi
Language:Jupyter Notebook 23
Ebola-Chan-bot / Image5D
5D图像读写库，全网最快第三方OIR读入器
5d bioformats image oir olympus ome tiff
Language:C++ 8
Cytomine-ULiege / Cytomine-BioFormats
A BioFormats wrapper for Cytomine PIMS
bioformats cytomine pims
Language:Groovy 1
yfukai / pycziutils
A tiny utility module to parse Zeiss CZI files in Python through python-bioformats.
zeiss-czi-files bioformats python
Language:Python 1
bwmr / vsi2tif
Take Olympus vsi stacks. Bleach-correct, write out ome-tiff. Save clicks.
bioformats fluorescence-data microscopy olympus vsi
Language:Python 0
tlambert03 / bioformats_jar
(deprecated) meta-package to import bioformats_jar from scyjava
bioformats ome python
Language:Python 0
Cytomine-ULiege / pims-plugin-format-bioformats
bioformats plugin
Language:Python

nf-core / mcmicro