Beast code in Giters

angelolab's repositories

ark-analysis

Integrated pipeline for multiplexed image analysis

Language:Jupyter NotebookMIT70 10 555

Nimbus

Language:PythonNOASSERTION13 3 34

toffy

Scripts for interacting with and generating data from the commercial MIBIScope

Language:Jupyter NotebookMIT10 8 226

pixie

Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering

Language:PythonNOASSERTION600

MAUI

GUI for low-level analysis of MIBI data

Language:MATLABBSD-3-Clause4 4 11

Nimbus-Inference

Language:PythonMIT300

TNBC_python_scripts

Language:Jupyter Notebook300

AMP

Augmentable MIBI Pipeline

Language:Python100

maldi-tools

Tools for extracting MALDI TIMS TOF 2 Data

Language:Python1 6 13

publications

Code from our publications

Language:Jupyter Notebook1 5 1

alpineer

Toolbox for Multiplexed Imaging

Language:PythonMIT02 13

ark-spatial

Experimental Multiplexed Imaging pipeline.

Language:PythonMIT000

FlowSOM

Using self-organizing maps for visualization and interpretation of cytometry data

Language:R000

mibi-bin-tools

Tools for extracting TIFF images from mibiscope bin files

Language:PythonMIT02 25

MIBIsualization

Visualization tools for MIBItiff data.

Language:Jupyter NotebookGPL-3.0000

MITA

Language:Jupyter NotebookNOASSERTION000

pyFlowSOM

Python implementation of the C-optimized FlowSOM library

Language:CythonNOASSERTION03 11

.github

Default community health files

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MIBIAnalysis

Low level analysis for MIBI images

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MibiPipeline

Original scripts for analyzing segmented MIBI data

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TNBC

Original scripts for Keren et al. 2018 Cell paper

Language:MATLAB000