Campbell Lab Toronto

Campbell Lab Toronto's repositories

astir

astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨

Language:PythonGPL-2.047 6 20

starling

Segmentation error aware clustering for multiplexed imaging

Language:PythonNOASSERTION11 4 9

cancersea

a simple R data package for curated cancer pathway-specific gene lists

Language:R7 30

2022_manatee_paper_analyses

Code implementing MANATEE used for the analyses in the associated paper.

Language:PythonGPL-3.04 20

beyond_benchmarking_analyses

Language:RGPL-3.04 10

active-learning-benchmarking

Language:R3 10

Astir-Vignette

Language:Jupyter Notebook3 20

leader

Language:R2 10

2021_SCVAR

Language:Python1 20

acdc

Bug fixed version of acdc

Language:Python1 10

astir-manuscript

Analysis code for "Automated assignment of cell identity from single-cellmultiplexed imaging and proteomic data"

Language:R1 1 1

inferorg

inferorg: automatic inference and conversion of gene ID formats across organisms

Language:R1 10

margo

Generates cell type marker which could be used for astir classification.

Language:PythonGPL-2.01 10

schapiro-2017

Pipeline to process tiff files + masks from Schapiro 2017 https://pubmed.ncbi.nlm.nih.gov/28783155/

Language:Python1 20

ACB_I_II

Language:JavaScript020

AstirRuntime

Language:Python010

scvi-tools-skeleton

Template repository for creating novel models with scvi-tools

Language:PythonBSD-3-Clause000

taproom

taproom: Tools for spAtial PROteOmics | 🍻 🖥

Language:RNOASSERTION020

VAE-project-JH

Language:Python020

active-learning-benchmarking-archive

Language:R020

HEB_RNASeq

Language:R010

infercnv-snakemake

Language:R01 1

visium_preprocessing

Language:Python010