Miles's repositories
jetson_nanopore_sequencing
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
guppy_parameter_optimiser
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate
illumina450k_filtering
A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
GPU-musings
A collection of my thoughts around GPUs for genomic analysis and sequencing
presentation_and_design_resources
A small repo to hold useful resources for various courses I teach
sirselim.github.io
Personal website, blog and notebook
tSNE_plotting
some documentation for exploring the plotting of tSNE results from various data sources
singularity-genmod
A quick singularity recipe for genmod to facilitate use in variant annotation pipelines
MTG-Markdown-Generator
A Python script to generate markdown tables for Magic: The Gathering cards using the Scryfall API.
MTGCardFinder
MTG Card Markdown Toolkit - a VSCode extension to grab card image and information for markdown documents.
NvidiaGTC_2021
My 40min presentation for Nvidia Spring GTC 2021 on portable sequencing tech and Nvidia GPUs
covid_analysis
Exploration of new Zealand COVID19 data from the MoH
AlkResBaz_KeyStory_2020
My Key Story presentation for Auckland Research Bazaar 2020
bedmeth2bedgraph
Small tool to convert bedmethyl format to custom bedgraph output
CLNR_401_plenary_presentation
My plenary presentation for the CLNR 401 weekend seminar
CMDHB-Visit-Jan2021
Short presention on portable sequencing for CMDHB visit to ESR
eResearch-Presentation-2021
My eResearch 2021 presentation on portable sequencing technology and it's role in community driven science.
frontline_genomics_presentation
Our presentation on 'real-time' genomics for ESR Data Science Week 2020.
immunecell_methylation_paper_data
This repository contains data, results and supplementary information to go alongside our manuscript detailing the validation of immune cell specific methylation markers.
presentation_karaoke
1 minute, random topic, random slides --- GO!
presentation_maps
A repo to store maps used in my presentations
random_plotting_scripts
A dump of some random and testing plotting scripts from various languages
spotify-github-profile
Show your Spotify playing on your Github profile
streamlit_app_test
A small repo to test out streamlit, a new tool for serving awesome web-based python apps.