genome-scaffolding

There are 2 repositories under genome-scaffolding topic.

• malonge / RaGOO

  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag

  bioinformaticsgenome-assemblygenome-scaffolding
  Language:Python 170

• tanghaibao / allhic

  Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

  hi-cgenomicsgenome-assemblygolanggenetic-algorithmpolyploidheterozygousgenome-scaffoldinginter-contig-linkscontigspipelinelachesis
  Language:Jupyter Notebook 59

• bcgsc / tigmint

  ⛓ Correct misassemblies using linked AND long reads

  misassembly-correctiongenome-scaffoldinggenome-assemblylinked-reads10xgenomicsbioinformaticsbioinformatics-tool
  Language:Python 54

• jteutenberg / downpore

  Suite of tools for use in genome assembly and consensus. Work in progress.

  genome-assemblylong-readgenome-scaffoldinggenome-mapping
  Language:Go 31

• bcgsc / SSAKE

  🍶 Genome assembly with short sequence reads

  sequence-assemblyread-pairsshort-readsdna-sequencesgenome-assemblergenome-scaffolding
  Language:Perl 24

• compbiol / CAMSA

  CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies

  genomicspythoncomparative-genomicsgenome-assemblygenome-scaffoldingscaffold-assemblyasssembly-reconciliation
  Language:Python 24

• bcgsc / physlr

  :chains: Construct a Physical Map from Linked Reads

  genome-assemblygenome-scaffoldinglinked-reads10xgenomicsbioinformaticsbioinformatics-tool
  Language:Python 18
• colora

  LiaOb21 / colora

  A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitochondrion and/or chloroplast). It automatically assesses the quality of the results.

  chromosome-level-assemblygenome-assemblygenome-scaffoldingorganelle-assembler
  Language:Python 13

• wtsi-hpag / scaffHiC

  Pipeline for genome scaffolding by modelling distributions of HiC pairs

  bioinformaticsgenome-scaffoldinghic-analysishic-qc
  Language:C 10

• wangyibin / collapse_rescue

  Method for rescuing collapsed contigs.

  genomicsgenome-assemblygenome-scaffoldinghi-cpolyploid
  Language:Python 2

• cwbeitel / lxy

  Genome scaffolding and phasing with Hi-C using a genetic algorithm approach.

  genetic-algorithmgenome-phasinggenome-scaffoldinggenomicshi-cmetagenomics
  Language:Go 1

• sjackman / tigmint-data

  Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules

  10xgenomicsbioinformaticsbioinformatics-analysisgenome-assemblygenome-scaffoldinglinked-readsmisassembly-correction
  Language:Makefile 1

• sjackman / tigmint-paper

  Tigmint: Correcting Assembly Errors Using Linked Reads From Large Molecules

  10xgenomicsbioinformaticsgenome-assemblygenome-scaffoldinglinked-readsmanuscriptmisassembly-correction
  Language:TeX

• suzuki-shm / RaGOO-in-cwl

  Wrapper tool of RaGOO by CWL and Docker

  cwlcwl-workflowcwltoolbioinformaticsgenome-assemblygenome-scaffoldingwrapper
  Language:Common Workflow Language