Park Lab at Harvard Medical School's repositories
NGSCheckMate
Software program for checking sample matching for NGS data
MosaicForecast
A mosaic detecting software based on phasing and random forest
MSIprofiler
Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data
Salamander
Salamander is a non-negative matrix factorization framework for signature analysis
SCAN2_PTA_paper_2022
Scripts for replicating the analyses in Luquette et al. 2022
xTea_paper
Host the scripts, running commands, and results for the xTea paper.
mutagenesis_tools
Scripts for simulating mutant peptides and reading frames from mutations
code-share
Repository to host shared code for the lab
luquette-glia-analysis
Scripts for the glia project
r-mutenrich
Analyze distribution of somatic mutations with permutations as a background
MIT000
SVA_catalog
Host the SVA reference catalog