clonal-analysis

There are 0 repository under clonal-analysis topic.

• AntonioDeFalco / SCEVAN

  R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

  single-cellcopy-number-variationcopynumbersubclonal-deconvolutionsubclone-identificationclonal-evolutionclonal-analysismicroenvironmenttumor-heterogeneitytumor-classificationtumor-evolutionscrna-seq-analysisscrna-pipelinescrna-seqaneuploidy
  Language:HTML 82

• Qile0317 / APackOfTheClones

  Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.

  clonal-analysissingle-cellsingle-cell-genomicsrseuratimmune-repertoireimmune-systemscrna-seqscrnaseq
  Language:R 13

• chenweng1991 / redeemR

  R package for ReDeeM: single-cell Regulatory multi-omics with Deep Mitochondrial mutation profiling.

  cell-stateclonal-analysislineage-tracingmulti-omicssingle-cellsingle-cell-genomics
  Language:Jupyter Notebook 9

• asalavaty / AutoClone

  Calculation of clonality (distances) based on color profiles (Saturation, Hue, and Lightness values)

  clonalityclonal-analysislineage-tracing
  Language:R 2

• phipsonlab / CloneDetective

  R Package for interrogating clonal data

  clonal-analysisclonal-evolutionngs-analysisr-packagescrnaseq
  Language:R