tree-inference

There are 0 repository under tree-inference topic.

• scFates

  LouisFaure / scFates

  a scalable python suite for tree inference and advanced pseudotime analysis from scRNAseq data.

  tree-inferenceelpigraphpseudotimescrnaseq
  Language:Python 60

• raphael-group / LAML

  LAML is a maximum likelihood algorithm to infer cell phylogeny from dynamic lineage tracing data

  lineage-tracingmaximum-likelihood-estimationphylogenysingle-celltree-inference
  Language:Python 11

• ggruber193 / automated-window-sliding

  Bioinformatics pipeline using a sliding window approach to create a sequence of trees from multiple sequence alignments.

  nextflowphylogeneticspipelinetree-inferenceworkflowsliding-window
  Language:Nextflow 4

• Chih-Hao-Wu / tree-inference-scrnaseq

  Uses clustering methods, tree edit distance, maximum likelihood based tree inference techniques to construct trees of tumor progression history from single cell RNA sequencing datasets

  single-cell-rna-sequencingtree-inferencetumor-phylogeny
  1