clonality

There are 0 repository under clonality topic.

FunGeST / Palimpsest
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
cancer-genomics genomics visualization r somatic-mutations mutational-signatures structural-variation clonality tumor-heterogeneity tumor-evolution signature-extraction nmf nmf-extraction structural-variant-signatures bioinformatics bioinformatics-analysis cancer-research driver-events
Language:R 68
poppr
grunwaldlab / poppr
🌶 An R package for genetic analysis of populations with mixed (clonal/sexual) reproduction
r multilocus-genotypes genetic-distances population-genetics multilocus-lineages genetic-analysis populations minimum-spanning-networks clonality
Language:R 67
dvav / clonosGP
A statistical approach for clonal deconvolution in cancer using longitudinal NGS data
bioinformatics bayesian-statistics gaussian-processes dirichlet-process-mixtures pymc3 cancer-genomics clonality
Language:Jupyter Notebook 7
davismcc / fibroblast-clonality
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.
single-cell-rna-seq single-cell-omics clonality fibroblast-clonality
Language:R 6
asalavaty / AutoClone
Calculation of clonality (distances) based on color profiles (Saturation, Hue, and Lightness values)
clonality clonal-analysis lineage-tracing
Language:R 2
zkamvar / dissertation
Zhian Kamvar's Ph. D. dissertation from Oregon State University
oregon-state-university dissertation poppr genetic-analysis plant-pathology population-genetics reproducible-research clonality
Language:TeX 2
AlexanderKononov / NGS-emulator
Detail WGS data simulation
clonality emulator chromosome duplication wgs cna simulation
Language:Python 1
AAlhendi1707 / PhylogicNDT_Docker
PhylogicNDT dockcer for clonal evolution analysis
broadinstitute clonality evolution somatic somatic-variants subclone ucl genomics
Language:Shell 0
CRUST
Subhayan18 / CRUST
R package for clonal deconvolution
deconvolution subclone-identification clonality vaf-distribution subclone phylogenetics
Language:R 0
Yonsei-TGIL / CLEMENT
Genomic decomposition and reconstruction of non-tumor diploid subclones
clonality decomposition-algorithm
Language:Jupyter Notebook 0
Astahlke / whitetop_clonality
Reopsitory with raw data and code to analyse the relationship between environmental conditions and clonality in Lepidium draba.
clonality genetic-data
Language:R
cpatarroyo / agrostatistics
R library for the analysis of partially clonal populations of polyploid individuals
clonality phytophthora-infestans population-genetics
Language:R