Yimin Zheng's repositories
SpatialTis
Spatial analysis toolkit for single cell multiplexed tissue data
python-hmr
🔄 Hot module reload for python, automatically reload your code when files are modified. No need to modify source code.
SpatialEntropy
A python implementation of spatial entropy
Aquila-next
The mono repo for Aquila, the spatial single cell database and analysis platform
streamlit-fire-state
Persist page state for multipage streamlit app
SpatialTis-core
Core algorithms implementations for SpatialTis
Art-of-holding-fish
摸鱼是需要技巧，而技巧造就艺术
deg-online
double-entry-generator web demo.
IMC-Analysis-Pipeline
Analyze IMC data using ilastik, CellProfiler, Scanpy and SpatialTis
MaaAssistantArknights
《明日方舟》小助手，全日常一键长草！| An Arknights assistant compatible with EN, JP, KR, ZH_TW clients
marsilea
Create x-layout visualization
mpl-third-party
Third-party Packages Webpage
pyviz.org
Source for the PyViz.org website.
ruff
An extremely fast Python linter, written in Rust.
scanpy
Single-cell analysis in Python. Scales to >1M cells.
scanpy-tutorials
Scanpy Tutorials.
SERP-AD-EyeTracking
My girlfriend's master thesis project
slideflow
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
vega
A visualization grammar.