nickbrazeau

bobfunctions2

A bunch of useful functions that make everyday coding easier.

discent

Gradient descent for estimating inbreeding spatial coefficients from pairwise-IBD estimates

HMMERTIME

Infer blocks of identity by descent between samples from unphased haplotype data using an HMM

nickbrazeau.github.io

My personal website: www.nicholasbrazeau.com

polySimIBD

Structured Wright Fisher Model for Malaria Population Genetic Simulations

Thesis-Hackathon_Space_the_Final_Miptier

VivID_Seq

P. vivax in the DRC 2013-2014, NGS/PopGen Codebank

Sepi_Res_CaseStudy

Codebank for the EMPH Manuscript (https://doi.org/10.1093/emph/eoaa031)

acconeer-python-exploration

Acconeer Python Exploration Tool

bactopia

A flexible pipeline for complete analysis of bacterial genomes

chim_QI_magic_eightball

Simple Shiny App for Project Overdue DM QI metrics

genescaper

Allele frequency mapping and outlier detection

genescaperlite

Stripped down version of Bob's Genescaper for AMMS2022

godiscent

goHMMERTIME

goodegg

Package developing framework and helper

gopolySimIBD

hmmibdr

icer

Infection composition estimation in R

jiffy_salmonella

playground salmonella jiffy outbreak

mip_bigbarcode_ehh

Extended Haplotype Heterozygosity work for "Big Barcode" Manuscript

mlrwrapSL

A simple wrapper of the SL algorithm using MLR toolbase

NFBteach

Collection of previous teaching materials

nflKOSA

OvID_EpiSeq

short-course

Model-based Inference in Ecology and Epidemiology

Space_the_Final_Miptier

starter-hugo-research-group

👥 轻松创建研究组或组织网站 Easily create a stunning Research Group, Team, or Business Website with no-code

template

A template for data analysis projects structured as R packages (or not)

VivID_Epi

P. vivax in the DRC 2013-2014, Epi Codebank