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nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.
mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads
Bacterial Epigenomics Analysis SuiTe
SMALR: a framework for single-molecule level interrogation of the methylation status of SMRT reads.
Single Molecule Real Time sequencing Epigenetic Refinement
Ultrafast exhaustive epistasis scan for quantitative traits with covariate adjustment
Tool for validation of methylation motifs detected with SMRT sequencing
