achacond

gem3-mapper

GEM-Mapper v3

gem-cutter

Highly optimized genomic resources for GPUs

k-step_FM-index

k-step FM-index: Ultra fast FM-index search primitives for CPU and GPU. The project introduces Thread-Cooperative and Alternate Counting designs. Includes CPU & GPU implementations, datasets and scripts for benchmarking.

myers-gpu

myers-gpu

nvbio

NVBIO is a library of reusable components designed to accelerate bioinformatics applications using CUDA.

bcbio_validations

Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses

bwa

Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)

CudaDMA

Emulating DMA Engines on GPUs for Performance and Portability

gem-gpu-benchmark

nvPSA

PSA: Pairwise sequence alignment CPU and GPU implementations.

dockstore-cgpwgs

Dockstore implementation of CGP core WGS analysis

FPGA-Design-Flow-using-Vivado

This course gives an introduction to digital design tool flow in Xilinx programmable devices using Vivado® Design software suite

margin

neon-guide

Makes ARM NEON documentation accessible (with examples)

nucleus

Python and C++ code for reading and writing genomics data.