rrrlw

TDAstats

R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.

ripserr

R package porting Ripser-based persistent homology calculation engines from C++ via Rcpp. Currently ports Ripser (Vietoris-Rips complex) and Cubical Ripser (cubical complex).

ICON

R package that provides complex systems datasets from the Colorado Index of Complex Networks (ICON) at https://icon.colorado.edu/.

visual-tda

R code associated with preprint proposing flat persistence diagram for better visualization of persistent homology.

advent-of-code

Solutions for annual Advent of Code challenge hosted at http://www.adventofcode.com/.

healthfinance

R package (on CRAN) that provides a financial model (shiny UI) to project revenue for healthcare practices based on unexpected events.

academia

R package to keep track of publication metrics for members of academia.

fitness

Software library providing fitness landscape functionality in R.

r-elective

Elective teaching basic data analysis with R to medical students.

advent-of-code-2019

Solutions for 2019's Advent of Code challenge at http://www.adventofcode.com.

awesome-advent-of-code

A collection of awesome resources related to the yearly Advent of Code challenge.

awesome-for-beginners

A list of awesome beginners-friendly projects.

awesome-R

A curated list of awesome R packages, frameworks and software.

c212

Methods for detecting safety signals in clinical trials using groupings of adverse events by body-system or system organ class.

contributR

R package to generate simple tables to document author contributions to research papers/projects.

covid-primary-care

Data and code supporting research project into potential primary care shortages as a result of the COVID-19 pandemic.

covid-sir

crosstalkr

R package for the identification of functionally important subnetworks

disruptr

Framework to facilitate in-silico repression or network disruption experiments

fitscape

R package to model fitness landscapes and seascapes.

MiR_Combo_Targeting

Companion code for the paper: "Network potential identifies therapeutic miRNA cocktails in Ewing sarcoma"

read-pdf

Convert PDFs of scanned images of text into TXT format so that text functions (e.g. search) can be used.

retract-cardiac

Code to generate figure from https://jamanetwork.com/journals/jamanetworkopen/fullarticle/2782170.

rweekly.org

R Weekly

shinytda

R package containing shiny modules to help visualize and teach concepts in topological data analysis (TDA).

sigQC

R package for gene signature quality control, available from CRAN

tda-book

A Gentle Introduction to Topological Data Analysis in R

tdaunif

uniform manifold samplers for topological data analysis

usethis

Set up commonly used 📦 components

website-copy

A repository for exercism's website's copy