dge

There are 0 repository under dge topic.

hbctraining / DGE_workshop
deseq2 dge rna-seq-data workshop
Language:HTML 357
sdparekh / zUMIs
zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs
rnaseq rna-seq single-cell umi expression barcodes fastq dge pipeline
Language:R 266
hbctraining / Intro-to-R-with-DGE
rna-seq-data workshop dge deseq2
Language:R 57
nunofonseca / fastq_utils
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
sequencing fastq validation ngs high-throughput-sequencing fastq-filterpair umi single-cell drop-seq 10x umi-count digital-gene-expression dge barcodes scrna-seq fastq-files fastq-validation
Language:C 34
mikelove / swish-demos
Demo of analyses using Swish from the fishpond Bioc package
rna-seq non-parametric dte dge swish fishpond
3
aobermayer4 / CPTAC_LUAD_HaploAnalysis
Methods overview with scripts looking at mtDNA and haplogroup association with CPTAC LUAD study.
cptac luad r edger limma glimma dge haplogroup nsclc
Language:R 0
auroramaurizio / my_RNA_seq_pipelines
my_RNA_seq_pipelines
bulk-rna-seq bulk-rna-seq-deconvolution dge plots pseudotime rna-seq scrna-seq trajectory velocity
Language:Jupyter Notebook 0
gavinf97 / R_shiny
R-shiny app for processing differential gene expression data
r shiny gene dge volcano-plot
Language:R 0
IvanKirchev / Reprohackathon
Finding out what went wrong with cancer cells of uveal melanoma
dge rna-seq
Language:Nextflow 0
michalbukowski / dge-ontology
Jupyter notebooks for DGE results and ontology analysis and visualisation.
data-visualization deseq2 deseq2-analysis dge ontology-analysis salmon salmon-deseq2 transcriptomics
Language:Jupyter Notebook 0
michalbukowski / rnaseq-pipeline-1
Simple Snakemake RNA-Seq pipeline
rna-seq rnaseq-analysis rnaseq-pipeline dge dge-analysis python3 r snakemake snakemake-pipeline snakemake-rna-seq salmon salmon-deseq2 pandas bioconductor miniconda python miniconda3
Language:Python 0
auroramaurizio / SurfR
An Rpackage to identify cells membrane marker genes from bulkRNA sequencing data
dge enrichment-analysis metaanalysis plots proteins public-data rnaseq rpackage surface surfaceome
Language:R