Swati Parekh's repositories

zUMIs

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

Language:RLicense:GPL-3.0Stargazers:265Issues:13Issues:378

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

License:MITStargazers:5Issues:1Issues:0

powsimR

Power analysis is essential to optimize the design of RNA-seq experiments and to assess and compare the power to detect differentially expressed genes. PowsimR is a flexible tool to simulate and evaluate differential expression from bulk and especially single-cell RNA-seq data making it suitable for a priori and posterior power analyses.

Language:RLicense:Artistic-2.0Stargazers:0Issues:1Issues:0

STAR

RNA-seq aligner

Language:CLicense:NOASSERTIONStargazers:0Issues:1Issues:0