michalbukowski's repositories
fetch-genomes
Download genomes from NCBI GenBank FTP site
aml-analysis
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
dge-ontology
Jupyter notebooks for DGE results and ontology analysis and visualisation.
hg-mapping
Map reads to the human genome and analyse the mapping results
mlst-genomes
Nextflow pipeline for in silico MLST sequence typing of Staphylococcus aureus genomes
Language:NextflowGPL-3.0000
pfam-genomes
Snakemake pipeline for searching genomic sequences for those that encode proteins containing domains of choice
rnaseq-pipeline-1
Simple Snakemake RNA-Seq pipeline
rnaseq-pipeline-2
Simple Nextflow RNA-Seq pipeline
tas-drug
Jupyter Python notebook for the tblastn-genomes pipeline output analysis and visualisation
Language:Jupyter NotebookGPL-3.0000
tblastn-genomes
Nextflow pipeline for automated translated BLAST searches in genomic sequences
Language:NextflowGPL-3.0000