michalbukowski's repositories
fetch-genomes
Download genomes from NCBI GenBank FTP site
aml-analysis
A collection of Jupyter notebooks for basic analysis of the data from the "BeatAML" study by Tyner et al. (2018)
dge-ontology
Jupyter notebooks for DGE results and ontology analysis and visualisation.
hg-mapping
Map reads to the human genome and analyse the mapping results
Language:NextflowGPL-3.0000
pfam-genomes
Snakemake pipeline for searching genomic sequences for those encoding proteins containing domains of choice
rnaseq-pipeline-1
Simple Snakemake RNA-Seq pipeline
rnaseq-pipeline-2
Simple Nextflow RNA-Seq pipeline