cyverse

There are 0 repository under cyverse topic.

sbl-sdsc / mmtf-genomics
Methods for mapping genomic data onto 3D protein structure.
genomics mutations protein-structure protein-data-bank dbsnp protein-protein-interaction protein-ligand-interactions protein-drug-interactions pyspark mmtf-pyspark binder cyverse
Language:Jupyter Notebook 27
Andries-B / Hamster
Cross-platform iRODS GUI client and metadata editor
python3 irods irods-client cyverse python pyqt pyqt6 pyqt6-desktop-application pyqt5 pyqt5-desktop-application
Language:Python 4
Computational-Plant-Science / pycyapi
unofficial Python CyVerse API client
client cyverse cyverse-discovery-environment http python
Language:Python 4
hclent / citesCyverse
A special version of the Science Citation Knowledge Extractor (SCKE) for CyVerse
cyverse flask natural-language-processing data-visualization
Language:HTML 2
warelab / sciapps
SciApps: a cloud-based platform for reproducible bioinformatics workflows
cyverse workflow agave
Language:JavaScript 2
Computational-Plant-Science / plantit-example-accessing-data
A simple workflow mapping an input file to an output file.
example data cyverse cyverse-discovery-environment plantit
1
cyverseuk / blast
blast docker image and cyverse integration
blast cyverse docker-image bioinformatics nucleotides dockerfile cyverseuk hpc hpc-applications
Language:Shell 0
cyverse-gis / calliope
Github.io website for Calliope Project
suas drones cyverse elasticsearch metadata
Language:HTML
cyverseuk / Bowtie2
cyverseuk cyverse bowtie2 sequence-alignment bioinformatics dockerfile hpc hpc-applications
Language:Shell
cyverseuk / btrim
cyverseuk cyverse agaveapi dockerfile bioinformatics trimming hpc hpc-applications
Language:Shell
cyverseuk / concatenate_files
cyverseuk cyverse concatenation bioinformatics agaveapi concatenate-files hpc hpc-applications
Language:Shell
cyverseuk / Cufflinks
cyverseuk cyverse agaveapi bioinformatics dockerfile cufflinks rna-seq hpc hpc-applications
Language:Shell
cyverseuk / cut_columns
cyverseuk cyverse agaveapi columns tabular-data bioinformatics hpc hpc-applications
Language:Shell
cyverseuk / MUSCLE
cyverseuk agaveapi cyverse muscle bioinformatics dockerfile sequence-alignment hpc hpc-applications
Language:Shell
cyverseuk / ocsi
bioinformatics application cyverseuk cyverse agaveapi dockerfile
Language:Python
cyverseuk / ontologizer
cyverseuk cyverse agaveapi ontology gene-ontology dockerfile bioinformatics hpc hpc-applications
Language:Shell
cyverseuk / Retrieve_BIP_Phenotypes
Docker container for retrieveing Phenotypic data from the Brassica Information Portal. It uses the BIP-API, stores output in .csv-format and passes the Sequence IDs on into a .txt file for further queries.
bip bip-api agave cyverse retrieve-brassica-phenotypes docker brassica-information-portal cyverseuk
Language:Ruby
cyverseuk / samtools
cyverseuk cyverse agaveapi dockerfile samtools bam-files bioinformatics sorting hpc-applications hpc
Language:Shell
cyverseuk / sickle
cyverseuk cyverse dockerfile agaveapi bioinformatics trimming fastq hpc hpc-applications
Language:Shell
cyverseuk / Tophat2
cyverseuk cyverse bioinformatics tophat bowtie2 samtools agaveapi dockerfile
Language:Shell
cyverseuk / Trimmomatic
docker image and Agave app for Trimmomatic software
cyverseuk cyverse agaveapi dockerfile bioinformatics trimming agave docker-image hpc hpc-applications
cyverseuk / uncompress_gunzip
cyverseuk cyverse agaveapi compression gunzip hpc hpc-applications
mwvaughn / cyverse-sdk
A resource for CyVerse developers
agaveapi cyverse api command-line tutorials examples cloud xsede hpc data
Language:Shell
willkuhn / towd
Exploring the evolutionary history of dragonflies and damselflies (Odonata) from their wings!
odonata wings digitization digitization-workflows morphology morphometrics species-identification national-science-foundation cyverse bisque