Structural Bioinformatics Laboratory's repositories
mmtf-pyspark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
mmtf-workshop-2018
Structural Bioinformatics Training Workshop & Hackathon 2018
mmtf-genomics
Methods for mapping genomic data onto 3D protein structure.
mmtf-spark
Methods for the parallel and distributed analysis and mining of the Protein Data Bank using MMTF and Apache Spark.
coronavirus-knowledge-graph
OBSOLETE: Prototype Neo4j Knowledge Graph for Coronavirus outbreaks (see NEW VERSION: https://github.com/covid-19-net/covid-19-community)
mmtf-workshop-2017
Structural Bioinformatics Training Workshop & Hackathon 2017
mmtf-proteomics
Methods for mapping proteomics data on 3D protein structure.
metal-binding-prediction
Methods to predict metal binding sites in a protein by its amino acid sequence
mmtf-hackathon-2018
Hackathon projects repository for MMTF Workshop 2018
biojava-notebooks
BioJava examples in Jupyter Notebooks
df-parallel
Comparison of Dataframe libraries for parallel processing of large tabular files on CPU and GPU.
neo4j-ipycytoscape
Demo of Neo4j graph visualization with the ipycytoscape Jupyter Lab extension
QuickStructureSearch
Obsolete student projects: Methods for fast structural database searches and clustering
structurecodec
Obsolete project: Provides high-density compression and decompression of biomolecular structures.
mexico-boundaries
GeoPandas GeoDataFrames for Mexican States and Municipalities
sifts-columnar
Benchmark and demo of representing SIFTS UniProt to PDB mappings in columnar data formats.
mmtf-benchmark
Benchmark mmtf compression/decompression
mmtf-pyspark-benchmarks
Benchmarks for mmtf-pyspark project
sars-cov-2-variants
SARS-CoV-2 Variant metadata