GenomicsNX's repositories
100-Days-Of-ML-Code
100 Days of ML Coding
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
CanDI
CanDI - A global cancer data integrator
cptac
Python packaging for CPTAC data
Data-Science-Projects
Explore my diverse collection of projects showcasing machine learning, data analysis, and more. Organized by project, each directory contains code, datasets, documentation, and resources. Dive in, to discover insights and techniques in data science. Reach out for collaborations and feedback.
DataAnalysisByExample
Medium Blog
DataScience_Interactive_Python
Python interactive dashboards for learning data science
Doing-Meta-Analysis-in-R
[Read-Only] All R code and source files for the online guide "Doing Meta-Analysis with R: A Hands-On Guide"
DragGAN
Official Code for DragGAN (SIGGRAPH 2023)
enrichment-analysis-training
Course material for Enrichment analysis course by SIB
generative-ai-for-beginners
18 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/
genomic-data-visualization-2024
Course website for Genomic Data Visualization 2024
ggplot2-graphic-design
"Graphic Design with ggplot2", a 2-day rstudio::conf(2022) Workshop by Cédric Scherer
home
Source code for online analysis at openCPU
jhustatcomputing2023
Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2023
LocalCitationNetwork.github.io
This web app aims to help scientists with their literature review using metadata from OpenAlex (OA), Semantic Scholar (S2) and Crossref (CR) in local citation networks.
NGS-introduction-training
SIB course that introduces analysis of NGS data
pubmed-pairs
✌️ Search PubMed for each pair of terms from two lists.
pymeta
Utility to download and extract document metadata from an organization. This technique can be used to identify: domains, usernames, software/version numbers and naming conventions.
Ret-opt
An AI based Retail Industry Optimisation Platform
single-cell-training
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
speed2
SPEED2:Inferring upstream pathway activity from differential gene expression
StableSR
Exploiting Diffusion Prior for Real-World Image Super-Resolution
TCGAplot
A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
topr
topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.
WGCNA-shinyApp
shiny app for WGCNA...