Zipkin Quantitative Ecology Lab's repositories
zipkinlab.github.io
http://zipkinlab.github.io - Code aggregation site for projects in the Zipkin lab
Farr_etal_2022_ConsBiol
M.T. Farr, T. O’Brien, C.B. Yackulic, and E.F. Zipkin. (2022). Quantifying the conservation status and abundance trends of wildlife communities with detection-nondetection data. Conservation Biology e13934.
Wright_etal_2020_LandEcol
Wright, A.D., Grant, E.H.C., & Zipkin, E.F. 2020. A hierarchical analysis of habitat area, connectivity, and quality on amphibian diversity across spatial scales.
Zipkin_etal_2020_Science
Zipkin, E.F., DiRenzo, G.V., Ray, J.M., Rossman, S., & Lips, K.R. 2020. Tropical snake diversity collapses after widespread amphibian loss. Science 367: 814–816.
Zipkin_etal_2023_JAE
Zipkin E.F. , Doser J.W., Davis C.L., Leuenberger W., Ayebare S., Davis K.L., (2023) Integrated community models: A framework combining multi-species data sources to estimate the status, trends, and dynamics of biodiversity. Journal of Animal Ecology.
Cabodevilla_etal_2022_AgEE
Cabodevilla, X., Wright, A. D., Villanua, D., Arroyo, B., and Zipkin, E. F. (2022). The implementation of irrigation leads to declines in farmland birds. Agriculture, Ecosystems, and Environment 323 (2022) 107701. https://doi.org/10.1016/j.agee.2021.107701
Ayebare_etal_2023_ProcB
An environmental habitat gradient and within-habitat segregation enable co-existence of ecologically similar bird species
Davis_etal_2022_EcolAndEvol
Davis, K. L., Silverman, E. D., Sussman, A. L., Wilson, R. R., Zipkin, E. F. (2022). Errors in aerial survey count data: Identifying pitfalls and solutions. Ecology and Evolution 12:e8733.
Davis_etal_2023_BioCons
Davis, K.L., S.P. Saunders, S. Beilke, E.R. Ford, J. Fuller, A. Landgraf, E.F. Zipkin. (2023). Breeding season management is unlikely to improve population viability of a data-deficient migratory species in decline. Biological Conservation 283:110104.
DiRenzo_etal_2018_EcoApps
DiRenzo, G. V., E. Zipkin, E. C. Grant, J. A. Royle, A. V. Longo, K. Z. Zamudio, and K. R. Lips. 2018. Eco-evolutionary rescue promotes host-pathogen coexistence. Ecological Applications 28: 1948-1962.
Doser_et_al_2024_MEE
Doser, J. W., Finley, A. O., Kéry, M., & Zipkin, E. F. (2024). spAbundance: An R package for single-species and multi-species spatially-explicit abundance models. Methods in Ecology and Evolution.
Doser_etal_2021_EcoApps
Doser, J. W., A. S. Weed, E. F. Zipkin, K. M. Miller, and A. O. Finley. 2021. Trends in bird abundance differ among protected forests but not bird guilds. Ecological Applications 00(00):e02377. 10. 1002/eap.2377
Doser_etal_2021_MEE
Doser, J. W., Finley, A. O., Weed, A. S., & Zipkin, E. F. (2021). Integrating automated acoustic vocalization data and point count surveys for estimation of bird abundance. Methods in Ecology and Evolution, 12(6), 1040-1049.
Doser_etal_2022_MEE
Doser, J. W., Leuenberger, W., Sillett, T. S., Hallworth, M. T., & Zipkin, E. F. (2022). Integrated community occupancy models: A framework to assess occurrence and biodiversity dynamics using multiple data sources. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13811
Doser_etal_2022_MEE_A
Doser, J. W., Finley, A. O., Kéry, M., & Zipkin, E. F. (2022). spOccupancy: An R package for single-species, multi-species, and integrated spatial occupancy models. Methods in Ecology and Evolution. DOI: https://doi.org/10.1111/2041-210X.13897
Farr_etal_2019_EcoApps
Farr, M.T., Green, D.S., Holekamp, K.E., Roloff, G.J., & Zipkin, E.F. 2019. Multi-species hierarchical modeling reveals variable responses of African carnivores to management alternatives. Ecological Applications 9(2): e01845.
Farr_etal_2021_Ecol
Farr, M. T., D. S. Green, K. E. Holekamp, and E. F. Zipkin. 2021. Integrating distance sampling and presence-only data to estimate species abundance. Ecology 102(1):e03204. 10.1002/ecy.3204
Green_etal_2019_PTRS
Green, D.S., Farr, M.T., Holekamp, K.E., Strauss, E.D., & Zipkin, E.F. 2019. Can hyena behavior predict abundances of sympatric carnivores? Philosophical Transactions of the Royal Society 374(1781): 20180052.
Williams_etal_2024_NatComm
Code and data for Williams, Zipkin, and Brodie (in review)
Wright_etal_2022_EcoApps
Wright, A. D., Grant, E. H. C., Zipkin, E. F. (2022). A comparison of monitoring designs to assess wildlife community parameters across spatial scales. Ecological Applications e2621
Zylstra_etal_2020_USGSreport
Zylstra, E. R., W. E. Thogmartin, M. I. Ramirez, and E. F. Zipkin. 2020. Summary of available data from the monarch overwintering colonies in central Mexico, 1976-1991. USGS Open-File Report 2020-1150.
Zylstra_etal_2022_GCB
Zylstra, E. R., Neupane, N., & Zipkin, E. F. (2022). Multi-season climate projections forecast declines in migratory monarch butterflies. Global Change Biology.