its-sequence

There are 0 repository under its-sequence topic.

bodeolukolu / Qmatey
Quantitative metagenomic alignment and taxonomic exact-matching
bioinformatics metagenomics 16s-seq its-sequence microbiome exact-matching shotgun-metagenomics reduced-representation-sequencing strain-level-profiling compositional-correlation
Language:Shell 6
tianrenmao / 16S-18S-ITS-ASAP
This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequences.
16s-rrna 18s-rrna its-sequence amplicon-sequencing qiime wrapper automatic-pipeline
Language:Perl 3
TraxlerLab / BlodgettProject
Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
amplicon-sequencing 16s-seq community-ecology its-sequence prescribedfire
Language:R 0
vanessapino / AUMicrobio
AU microbiome molecular exploratory analyses for NSW
bacteria microbiome-analysis soil 16s-seq fungi its its-sequence
Language:R 0

bodeolukolu / Qmatey