Jeff Didier's repositories
myNLP2HPO_GenDis_pipeline
Research Practical and Master Thesis topic for the University of Luxembourg. Natural language processing pipeline to extract HPO terms from clinical notes or EHR, annotate genes and diseases to the extracted terms and prioritize them by their frequency.
hpo_similarity
Analysis of similarity of HPO terms in groups of individuals
Language:Python000
obo_parser
Parses ontologies in .obo format (such as the Human Phenotype Ontology) and converts them to a .tsv table.
Language:PythonMIT000
pubmed_mining
Term-based text-mining of the PubMed repository.
Language:RNOASSERTION000
simple-java-maven-app
For an introductory tutorial on how to use Jenkins to build a simple Java application with Maven.
Language:Java000
xmi2hpo
Small scripts for various purposes
Language:Python000