clinical-nlp

There are 13 repositories under clinical-nlp topic.

medspacy / medspacy
Library for clinical NLP with spaCy.
nlp nlp-library spacy clinical-nlp pipeline medspacy
Language:Jupyter Notebook 598
abachaa / MedQuAD
Medical Question Answering Dataset of 47,457 QA pairs created from 12 NIH websites
clinical-nlp medical-informatics medical-nlp natural-language-processing question-answering
381
BIDS-Xu-Lab / Me-LLaMA
A novel medical large language model family with 13/70B parameters, which have SOTA performances on various medical tasks
biomedical-nlp biomedical-text-mining chatgpt clinical-nlp gpt-4 large-language-models llama llama2 llm medical-medical-application medical-large-language-models medical-question-answering
Language:Python 146
lindvalllab / clinicalXLNet
Clinical XLNet: Modeling Sequential Clinical Notes and Predicting Prolonged Mechanical Ventilation
clinical-nlp xlnet pmv-prediction
Language:Python 48
NLPatVCU / multitasking_transformers
Multitask Learning with Pretrained Transformers
bert clinical-nlp deep-learning multi-task-learning
Language:Python 39
ritaranx / ClinGen
[ACL 2024 Findings] This is the code for our paper "Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models".
clinical-nlp large-language-model llm medical synthetic-data-generation mednli
Language:Python 38
AI-in-Health / Patient-Instructions
[NeurIPS 2022] Code for "Retrieve, Reason, and Refine: Generating Accurate and Faithful Discharge/Patient Instructions"
clinical-data clinical-nlp knowledge-graph machine-learning neurips neurips-2022 retrieve
Language:Jupyter Notebook 32
kavgan / clinical-concepts
Discovering Related Clinical Concepts using Large Amounts of Clinical Notes. An unsupervised graphical approach to mine related concepts by leveraging the volume within large amounts of clinical notes.
graph-nlp clinical-concepts clinical-notes paper concept-graph terminologies nlp clinical-nlp
26
asyml / ForteHealth
The project is in the incubation stage and still under development. ForteHealth is a flexible and powerful ML workflow builder for biomedical and clinical scenarios. This is part of the CASL project: http://casl-project.ai/
biomedical-named-entity-recognition clinical-nlp clinical-text-processing data-processing deep-learning information-retrieval machine-learning natural-language natural-language-processing python
Language:Python 12
medspacy / sectionizer
A rule-based Python module for spitting documents into sections.
nlp medspacy spacy nlp-library pipeline clinical-nlp
Language:Jupyter Notebook 12
shaoxiongji / DCAN
Dilated Convolutional Attention Network for Medical Code Assignment from Clinical Text, ClinicalNLP workshop at EMNLP 2020
clinical-nlp deep-neural-networks icd-coding
Language:Python 12
umcu / dutch-medical-concepts
Instructions and code to create for a table of UMLS, SNOMED or HPO concepts containing Dutch medical names, usable in named entity recognition and linking methods such MedCAT.
medcat medical-natural-language-processing umls snomed dutch medical-text-mining clinical-nlp medical named-entity-linking named-entity-recognition hpo
Language:Jupyter Notebook 9
cltl / a-proof-zonmw
Detecting the functioning level of a patient from a free-text clinical note in Dutch.
nlp dutch who-icf clinical-nlp electronic-health-records fine-tuning multi-label-classification regression-model simple-transformers
Language:Jupyter Notebook 7
kharrigian / ehr-stigma
Official repo for "Characterizing Stigmatizing Language in Medical Records" (ACL 2023)
bias clinical-nlp ehr medical-records mimic-iv pretrained-models stigma
Language:Python 6
ju-resplande / askD
AskDocs: A medical QA dataset
clinical clinical-nlp dataset english medical medical-natural-language-processing nlp portuguese semantic-similarity similarity sts qa question-answering
Language:Jupyter Notebook 5
medspacy / cycontext
A Python implementation of the ConText algorithm for clinical text concept assertion using the spaCy framework
spacy medspacy nlp nlp-library pipeline clinical-nlp
Language:Jupyter Notebook 5
ck37 / clinsent
Estimate sentiment in clinical notes via keywords or deep learning models
clinical-nlp clinical-notes clinical-sentiment ehr sentiment sentiment-analysis
Language:Python 4
crherlihy / clinical_nli_artifacts
MedNLI Is Not Immune: Natural Language Inference Artifacts in the Clinical Domain (ACL-IJCNLP '21)
nlp-machine-learning clinical-nlp clinical-notes mimic-iii mednlp annotation-artifacts adversarial-filtering natural-language-inference
Language:Python 2
lathashree01 / LlamaClinicalRE
Llama based clinical RE framework
clinical-nlp deep-learning healthcare large-language-models llama llama2 nlp
Language:Jupyter Notebook 2
avi-otterai / RadiologyQA
MSR Cambridge Internship Summer 2023
biomedical-nlp clinical-nlp github-actions literature-review netlify nlp nlp-machine-learning radiology radiology-reports semantic-scholar visual-question-answering
Language:Vue 1
JINHXu / Early-Sepsis-Prediction-using-TSF
Early Prediction of Sepsis using Time Seiries Forecasting (Published at 2023 IEEE AI4Health)
clinical-nlp clinical-research clinicalbert deep-learning machine-learning multimodal-learning nlp regression sepsis time-series-forecasting transformer
Language:Python 1
lukasz-starosta / medical-text-platform
Application to analyze clinical texts input by users to extract symptoms and treatments. Created with React, Java and Python.
docker containers nlp python react firebase java javascript medical clinical-nlp spring
Language:Java 1
medspacy / nlp_preprocessor
SpaCy component for modifying the string of a doc before tokenizing.
nlp spacy nlp-library clinical-nlp medspacy pipeline
Language:Python 1
sacredvoid / ai_clinical_trial
Developing a system to match eligible patients to ongoing clinical trials using Vector Embeddings and LLMs!
chromadb clinical-nlp clinical-trial-management-system clinical-trials embedding-models llama llama3-2 llm sqlite
Language:Python 1
xiaoyuxin1002 / bias_in_deid
In the Name of Fairness: Assessing the Bias in Clinical Record De-identification
bias clinical-nlp de-identification fairness named-entity-recognition
Language:Jupyter Notebook 1
lindvalllab / MedSlice
A sectioning tool for clinical notes using fine-tuned LLMs
clinical-nlp llm nlp
Language:Python 0
medspacy / nlp_postprocessor
A spaCy component for executing custom logic at the end of a pipeline.
nlp nlp-library spacy clinical-nlp medspacy pipeline
Language:Python 0
melaxtech / clamp-examples
clinical-nlp natual-language-processing
Language:HTML 0
MUSC-TBIC / ots-ensemble-systems
Off-the-Shelf Ensemble Systems
clinical-nlp ensemble-classifier ensembles nlp nlp-machine-learning
Language:Python 0
maastroclinic / pyConTextNLP
Extract context modifiers targeting clinical terms
clinical-nlp
Language:HTML
monk1337 / Clift
CLIFT : Analysing Natural Distribution Shift on Question Answering Models in Clinical Domain
clinical-data clinical-nlp clinical-research distribution-shift question-answering question-answering-dataset
shibbir-ahmad24 / MS-Final-Project-on-LLM-RAG-Powered-Medical-Chatbot
Developing an LLM-RAG Powered Medical Chatbot for Clinical Question Answering
chatbot clinical-nlp llm mimic-iv rag web-application
WojciechKusa / llm-disease-conversations
[NLPMC 2023] "Dr LLM, what do I have?": The Impact of User Beliefs and Prompt Formulation on Health Diagnoses
clinical-nlp chat-gpt gpt-4 health-diagnosis
Language:Jupyter Notebook

clinical-nlp

medspacy / medspacy

abachaa / MedQuAD

BIDS-Xu-Lab / Me-LLaMA

lindvalllab / clinicalXLNet

NLPatVCU / multitasking_transformers

ritaranx / ClinGen

AI-in-Health / Patient-Instructions

kavgan / clinical-concepts

asyml / ForteHealth

medspacy / sectionizer

shaoxiongji / DCAN

umcu / dutch-medical-concepts

cltl / a-proof-zonmw

kharrigian / ehr-stigma

ju-resplande / askD

medspacy / cycontext

ck37 / clinsent

crherlihy / clinical_nli_artifacts

lathashree01 / LlamaClinicalRE

avi-otterai / RadiologyQA

JINHXu / Early-Sepsis-Prediction-using-TSF

lukasz-starosta / medical-text-platform

medspacy / nlp_preprocessor

sacredvoid / ai_clinical_trial

xiaoyuxin1002 / bias_in_deid

lindvalllab / MedSlice

medspacy / nlp_postprocessor

melaxtech / clamp-examples

MUSC-TBIC / ots-ensemble-systems

maastroclinic / pyConTextNLP

monk1337 / Clift

shibbir-ahmad24 / MS-Final-Project-on-LLM-RAG-Powered-Medical-Chatbot

WojciechKusa / llm-disease-conversations