dropseq

There are 0 repository under dropseq topic.

Hoohm / dropSeqPipe
A SingleCell RNASeq pre-processing snakemake workflow
drop-seq snakemake pipeline dropseq yaml star picard reference-genome umi scrbseq scrb-seq multiqc conda plot dropseqtools
Language:Python 146
Hoohm / CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
10x citeseq dropseq single-cell
Language:Python 73
BIMSBbioinfo / pigx
Pipelines in genomics
bisulfite-sequencing rnaseq dropseq chipseq snakemake guix genomics
Language:HTML 20
dibbelab / singlecell_bcatlas
Breast Cancer Single Cell Atlas
breastcancer singlecell dropseq cell-lines gf-icf
11
BIMSBbioinfo / pigx_scrnaseq
Pipeline for analysis of Dropseq single cell data
dropseq single-cell-rna-seq snakemake-workflows guix
Language:Python 9
ComputationalSystemsBiology / Single-cell-RNA-seq
Workflows for handling automatic single-cell RNA seq analysis
smartseq2 dropseq
Language:Java 8
gambalab / dropseq
Pipeline to process DROP-seq data
dropseq dropseqtools picard single-cell-analysis single-cell-rna-seq star-algorithm
Language:Java 1
JulianSpagnuolo / adtseq
adtseq provides simple Rcpp methods to identify Antibody-Derived-Tags in single cell CITE/REAP-seq data
citeseq cite-seq dropseqtools dropseq drop-seq 10x 10x-genomics scrna-seq scrna-seq-analysis scrnaseq
Language:C++ 1
GwangWooKim / SBC-analysis
SBC analysis with DIGIST (In progress)
covariate-adjustment deseq2 dropseq single-cell-analysis smart-seq2
Language:R 0