alienzj

gtdb.ecogenomic.org

https://gtdb.ecogenomic.org/

alignment-and-variant-calling-tutorial

basic walk-throughs for alignment and variant calling from NGS sequencing data

arcasHLA

Fast and accurate in silico inference of HLA genotypes from RNA-seq

atlas

ATLAS - Three commands to start analysing your metagenome data

biotk

Daily work debugging and biotk development with Mistral-7B

dirscan

A high performance tool for summarizing large directories or drives

docker-wechat

DoChat is a Dockerized WeChat (盒装微信) PC Windows Client for Linux

doom.d

doom-emacs private configuration

dotfiles

And I say hey, what's going on?

figaro

An efficient and objective tool for optimizing microbiome rRNA gene trimming parameters

floria

Strain-level haplotyping for metagenomes with short or long-reads.

ggml

Tensor library for machine learning

lefse

llama.cpp

LLM inference in C/C++

llama2.c

Inference Llama 2 in one file of pure C

llm.c

LLM training in simple, raw C/CUDA

magick.css

magically playful, yet simple styling. all in one file.

medi

Metagenomic Estimation of Dietary Intake and Content.

MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

MicrobiotaProcess

nohuman

Remove human reads from a sequencing run

ollama-ui

Simple HTML UI for Ollama

phanta

Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes

radEmu

SemiBin

slurmzy

Slurm wrapper scripts

ugene

UGENE is free open-source cross-platform bioinformatics software

vamb

Variational autoencoder for metagenomic binning

whisper.cpp

Port of OpenAI's Whisper model in C/C++

Write_A_Genome_Assembler_With_IPython

The repository keeps the files for an IPython notebook on about how to make a simple genome assembler using python