alienzj

dotfiles

And I say hey, what's going on?

alienzj.github.io

ZJ Org Blog

atlas

ATLAS - Three commands to start analysing your metagenome data

BioArchlinux-Packages

Aim to be the bioinformatics repository with more and newer packages

biotk

Daily work debugging and biotk development with Mistral-7B

cloud-atlas

云计算指南

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

diced

A Rust reimplementation of the MinCED method for identifying CRISPRs in full or assembled genomes.

doom.d

doom-emacs private configuration

home-manager

Manage a user environment using Nix [maintainer=@rycee]

iskylims

is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

Longitudinal-gut-microbiome-changes-in-ICB-treated-advanced-melanoma

megahit

Ultra-fast and memory-efficient (meta-)genome assembler

MetaPhlAn

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

microshades

This repo contains the R microshades package, which contains a color blind accessible color palette with 30 unique colors and functions for applying these colors to microbiome data.

nix-config-ryan4yin

❄️ my nix config for both desktops(NixOS+macOS) and homelab servers(NixOS).

nixos-router

A somewhat generic nixos module for a router

phamb

Downstream processing of VAMB binning for Viral Elucidation

phanta

Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes

phylophlan

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes

radEmu

rathole

A lightweight and high-performance reverse proxy for NAT traversal, written in Rust. An alternative to frp and ngrok.

raxml-ng

RAxML Next Generation: faster, easier-to-use and more flexible

sardyne

scfa_predictions

Microbial community-scale metabolic modeling predicts personalized short-chain-fatty-acid production profiles in the human gut

SemiBin

snakefmt

The uncompromising Snakemake code formatter

spades

SPAdes Genome Assembler

spades-snakemake-test

winapps2

The winapps main project, forked from https://github.com/Fmstrat/winapps/