pangenome-pipeline

There are 0 repository under pangenome-pipeline topic.

NBChub / bgcflow
Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)
pangenome-pipeline biosynthetic-gene-clusters genome-annotation genome-analysis
Language:Python 25
SWittouck / SCARAP
A toolkit for prokaryotic comparative genomics
pangenome-inference comparative-genomics pangenome-pipeline
Language:Python 23
FarhanaRiaz123 / Pangenome-Analysis
Pangenome-Analysis.py is written for extraction of core, accessory and unique genomes (Gene families and proteins) along with filtration of single copy orthologues, creation of binary and count matrices as well as removal of duplicates.
pangenome pangenome-inference coregenome singletons orthomcl downstream-analysis accessory-genes binary-matrix count-matrix bioinformatics-analysis bioinformatics biology plasmodium duplicates-removal proteome-clustering gene-families gene-family annotation pangenome-pipeline clustering
Language:Python 2
gauravcodepro / pangenome-single-copy-gene
single copy pangenome analysis from alignments to phylogeny and support GTRCAT and GTRGAMA model
pangenome pangenome-inference pangenome-pipeline bioinformatics bioinformatics-analysis
Language:Shell 1
lucianhu / Masterarbeit
Leveraging WES short reads for PAN-EXOME creation and analysis.
exome exome-pipeline exome-sequencing ngs ngs-analysis ngs-pipeline pangenome pangenome-graph pangenome-pipeline pangenomic-analysis
Language:WDL 0
downingtim / LSDV_PVG
The lumpy skin disease virus (LSDV) pangenome variation graph (PVG)
evolution gpv heaps-law pangenome pangenome-analysis pangenome-clustering pangenome-graph pangenome-growth pangenome-inference pangenome-pipeline pangenomic-analysis pangenomics virus goatpox lsdv poxvirus sheeppox sppv
Language:R