Kalan-Lab's repositories
lsaBGC-Pan
lsaBGC - suite for pan-BGC-omics analysis
Bioassay-ML-Image-Classification
This repository contains a script for training a machine learning model to classify images into categories. The model is trained on custom images provided by the user.
DeLaCruz_Townsend_etal_PorcineSkinMicrobiome
Code for data analysis and figures for the manuscript "Discovering the Microbial Community and Antifungals within the Porcine Skin Microbiome" by K. De La Cruz and E.C. Townsend et al.
Salamzade_etal_CtuberCompGen
Code for Comparative Genomics + Metagenomic Investigation of the C. tuberculostearicum species complex
Salamzade_etal_zol
Misc. code & scripts associated with the zol & fai manuscript.
Spurgeon_Townsend_etal_MmuPV1_VaginalMicrobiome
Code for data analysis and figures for the manuscript "Key aspects of papillomavirus infection influence the host cervicovaginal microbiome in a preclinical murine papillomavirus (MmuPV1) infection model" by M.E. Spurgeon and E.C. Townsend et al.
Swaney_etal_CobamidePaper
Code for data analysis and visualization in Swaney et al. mSystems 2022
Swaney_etal_SkinMediaPaper
Code for data analysis and visualization in Swaney et al. Microbiology Spectrum 2023
Townsend_etal_WhatIsSlough
Code for data analysis and figures for the manuscript "What is Slough? Defining the proteomic and microbial composition of wound slough and its implications for wound healing" by E.C. Townsend et al.
Townsend_etal_StillNotSterile
Code for data analysis and figures for the manuscript "Still Not Sterile: Chlorhexidine gluconate does not completely reduce skin microbial bioburden and promotes pathogen overabundance in patients undergoing elective surgeries" by E.C. Townsend et al.