bgc

There are 0 repository under bgc topic.

• nf-core / funcscan

  (Meta-)genome screening for functional and natural product gene sequences

  nextflowworkflowpipelineassemblycontigsfunctionscreeningmetagenomicsnatural-productsantimicrobial-resistance-genesantimicrobial-peptidesbiosynthetic-gene-clustersbioinformaticsampantibiotic-resistanceargbgcsecondary-metabolitesamrnf-core
  Language:Nextflow 58

• Kalan-Lab / zol

  zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

  bioinformaticsgene-clustersgenomicsdetectionevolutionbgcphagebiosynthetic-gene-clusterscomparative-genomicsmetagenomicsmobile-genetic-elements
  Language:Python 36

• Kalan-Lab / lsaBGC

  lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

  bioinformaticsbiosynthetic-gene-clustersevolutionary-analysisgenomicsbgc
  Language:Python 33

• btmartin721 / ClineHelpR

  Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

  genomic-clinebgcintrogressionintrogressrr-packagechromosomeideogramenmevalmaxentrasterplothybridizationhybrid-zone
  Language:R 16

• gvignolle / FunOrder

  The Functional Order (FunOrder) tool - Identification of essential biosynthetic genes through computational molecular co-evolution – novel tool that allows automated identification of essential genes in a biosynthetic gene clusters (BGC) based solely on genomic data

  bioinformatics-toolbioinformaticsbgcbiosynthetic-gene-clustersbiosynthesisevolutionary-computationbioinformatics-pipeline
  5

• jorgecnavarrom / BGClib

  Methods and classes to support Biosynthetic Gene Cluster analysis

  bgcbioinformaticssecondary-metabolitesbiosynthetic-gene-clusters
  Language:Python 5

• ostash-group / BGCViz

  BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.

  antismash-bgc-annotationsantismash-databgcclustersplots
  Language:R 5

• btmartin721 / file_converters

  File conversion scripts for DNA sequence data

  fileconversionsequence-alignmentdna-sequencespyradlocifastaphylipconverterconversion-scriptsvdquartetsbgcbayesian-genomic-clinegenomic-clinevcf
  Language:Python 2

• pavlohrab / BGCViz

  BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.

  clustersbgcantismashantismash-bgc-annotationsantismash-datadeepbgccomparison
  Language:R 2

• bitgoldcoin-project / bitgoldcoin

  BGC Official Site

  altercoinbgcbgcexchangebitcoinkoreaodinsoft
  Language:C++ 0

• gavinf97 / thesisreal

  My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.

  ngsbioinformaticspipelinegenomicsbash-scriptr-markdownnextflow-pipelinessnakemake-pipelinesbgcantismashmicrobiomeassembly
  Language:Jupyter Notebook 0