Zeller Lab

Zeller Lab's repositories

GECCO

GEne Cluster prediction with COnditional random fields.

Language:PythonGPL-3.054 5 14

siamcat

R package for Statistical Inference of Associations between Microbial Communities And host phenoType

Language:R48 5 43

crc_meta

Code and analysis results for the CRC shotgun meta-analysis

Language:RGPL-3.036 5 5

stag

A hierarchical taxonomic classifier for metagenomic sequences

Language:Python8 2 23

cayman

Language:PythonMIT6 3 2

siamcat_paper

Analysis scripts and results presented in the SIAMCAT paper

Language:RGPL-3.04 3 1

gaga2

Language:Nextflow3 2 5

An-Atlas-of-the-Liver-Cancer-Microbiome

An Atlas of the Liver Cancer Microbiome

Language:RGPL-3.01 60

BAMBI

Benchmarking Analysis of MicroBiome Inference methods

Language:R1 30

SIMBA

R package for the simulation of metagenomic samples

Language:R1 3 3

commensal_clostridiales

Analysis code for the commensal Clostridiales project

Language:R030

GECCO-data

The dvc pipeline to build the data for training GECCO.

Language:PythonMIT040

hd-hub-profiles

Profiles of HD-HuB Members

020

hd-hub-tools

HD-HuB Tool Descriptions

Language:Python030

vortex_light

Language:NextflowMIT030

Buchinger_Long_Term_Fasting

CC0-1.0030

cayman_paper

Language:R060

EBI_metaG_bioinformatics

Materials for the EMBL-EBI Metagenomics Bioinformatics course

Language:HTML020

gut-microbial-metabolism-of-immunosuppressants

Language:RGPL-3.0000

nevermore

Zeller-group fork of Nevermore

Language:NextflowMIT001

specI_utilities

usefuls scripts to work with specI clusters

Language:Python040

ZellerLab.github.io

Website for the Zeller Lab

Language:HTML004