luisvalesilva

Luís's repositories

multisurv

Multimodal deep learning model for long-term cancer survival prediction

Language:Jupyter NotebookMIT73 1 3

wsipre

Handling whole-slide images with region-level annotations.

Language:Jupyter NotebookMIT9 2 1

digitre

Machine learning web app to recognize handwritten digits

Language:Jupyter NotebookMIT4 2 2

exploring_citibike

Code for website post on exploring CitiBike data

Language:Jupyter Notebook3 20

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

MIT100

random_forests

An overview of decision trees and the random forest ML algorithm

Language:Jupyter NotebookMIT1 20

awesome-multi-omics

List of software packages for multi-omics analysis

MIT000

ChIPseq_functions

Hochwagen lab ChIP-seq pipelines

Language:Shell020

chr_size_bias_in_ssDNA_chip-chip

Screen lab's ssDNA ChIP-chip library for chromosome size bias effects.

Language:PythonMIT020

daothilab

Dao Thi Lab web page

Language:HTML02 1

datasimple

Data Science website

Language:HTMLNOASSERTION020

fix_plate_readings

Fix readings of plates put in the luminometer flipped around the wrong way.

Language:PythonMIT020

luisvalesilva.github.io

My personal website

Language:HTMLApache-2.0020

NYC_Data_IPA

New York City Transportation and Weather Maps

Language:HTML020

pbs_scripts

My pbs_scripts, written to run jobs on the HPC

Language:ShellMIT020

polyA_clipper

Simple FASTQ poly(A) tail clipper

Language:PythonMIT020

shell_scripts

My (mostly bash) shell scripts, including a template

Language:ShellMIT020

signal_at_orf

Calculate signal at ORF genome-wide (python 3 implementation of namesake function in hwglabr)

Language:PythonMIT020

silvar

My personal R package

Language:RMIT020

snpr

Introduce point mutations (SNPs) in FASTA at specified frequency

Language:PythonMIT020

word_clouds

Using a python application to make word clouds

Language:Jupyter Notebook020