EDAMontology's repositories
edamontology
EDAM is an ontology of bioscientific data analysis and data management. EDAM concentrates on topics, operations, types of data, and data formats related to analysis, modelling, optimisation, and data life-cycle in biosciences, and in other research and science-based applications.
edam-browser
Stand-alone, lightweight, and fast JavaScript browser for EDAM and other ontologies
edam-bioimaging
Ontology of bioimage informatics operations, topics, types of data, and data formats. EDAM-Bioimaging is an extension of the EDAM ontology (edamontology.org) dedicated to bioimaging data analysis, and developed in an open collaboration including partners from NEUBIAS (neubias.org), COMULIS (comulis.eu), and ELIXIR (elixir-europe.org)..
pubfetcher
A Java command-line tool and library to download and store publications with metadata by combining content from various online resources
edam-popovers
A Firefox & Chrome extension that displays detailed information about EDAM concepts
edam2json-js
Javascript library to convert EDAM to JSON/JSON-LD
caseologue
Validation tools for the EDAM ontology
edamontologyDocs
Documentation for EDAM.
edamverify
Next-generation EDAM quality-control utility
benten
A language server for Common Workflow Language
debtag2edam2debtags
The EDAM ontology for bioinformatics tools and services should be come compatible with the Debtags and vice versa. This project starts out with adding EDAM references to the debtags volcabulary export file.
edam-geo
Extension of EDAM towards geo- and other sciences, including Earth and planetary sciences, climate science, ecology, public health, environmental monitoring, emergency management, etc. Everyone welcome to view & comment at https://webprotege.stanford.edu/#projects/69591619-4eda-4f03-9e7f-65b213038fe1/edit/Classes (free registration needed).
edam-geo-test.bak
Extension of the EDAM ontology for geo-related concepts, including areas of Earth and planetary sciences, climate research, ecology, public health, etc.
edam-geo-wp-dump
EDAM ("Geo"), raw download from WebProtégé
edam-playground
Slides, swings, and sandbox ontology
edamontology.org
Static EDAM website
edamxpathvalidator
Verification script for the EDAM ontology
jupyterlab-test
Testing OWL tools in JupyterLab (in usegalaxy.eu)