zbmed-semtec's repositories
BioHackOutcomes
BioHackathon project to define and follow up BioHackathon projects
BioMedSem-IR-KD
A course on Biomedical Semantics, Information Retrieval and Knowledge Discovery
bioschemas-ghpages-markup-tutorial
A tutorial on how to add Bioschemas markup to GitHub pages
mlentory-etl-pipeline
This repository aims at exploring APIs from different ML-related platforms so we can harvest and harmonize data from them
bioschemas-github-markup-example
Repository hosting examples of markup added to GitHub pages, mainly used for tutorials
dome-galaxy-training
Training materials about the DOME recommendations with a Galaxy tutorial as use case
hybrid-pre-doc2vec-doc-relevance
Hybrid approach combining dictionary-based NER and doc2vec
mowl-graph2doc2vec
A repository to explore the use of ontology-based graphs (generated with MOWL) as background knowledge for scientific publications.
ontoclue
OntoClue - An ontology-based approach for finding and creating clusters useful for life sciences literature-based knowledge discovery
sample-smp-code-repo
Sample code repository to use as an example to extract metadata for ELIXIR SMPs
somef-fork
Use of SOftware Metadata Extraction Framework (SOMEF) for the use case of Software Management Plans
topic-categorization-system
Topic categorization on scientific papers to improve information retrieval in the biomedical domain.
TREC-doc-2-doc-relevance
doc-2-doc relevance assessment on PMIDs used in the TREC 2005 Genomics track
zbmed-semtec.github.io
GitHub pages for the Semantic Technologies team at ZB MED
doc2vec-doc-relevance
An approach exploring and assessing literature-based doc-2-doc recommendations using a doc2vec and applying to TREC and RELISH datasets
FAIRification-game-4RS-data
This repository is used to mock research software repositories (via folders) used in the "FAIRification game for Research Software".
maSMPs-metadata-extraction
This repository supports metadata extraction aligned to the maSMP metadata schema
w3id.org
Website source code for w3id.org.
word2doc2vec-doc-relevance
An approach exploring and assessing literature-based doc-2-doc recommendations using word2vec combined with doc2vec, and applying it to TREC and RELISH datasets