richelbilderbeek / pirouette

R package that estimates the error BEAST2 makes from a given phylogeny

pirouette

Branch
master
develop

pirouette is an R package that estimates the error BEAST2 makes from a given phylogeny. This phylogeny can be created using any (non-BEAST) speciation model, for example the Protracted Birth-Death or Multiple-Birth-Death models.

• Installation.
• Examples
• Interpretation.
• Academic article

Common abbreviations

• nsm: Nucleotide Substitution Model
• tral: TRue ALignment
• twal: TWin ALignment

FAQ

See the FAQ.

There is a feature I miss

See CONTRIBUTING, at Submitting use cases

I want to collaborate

See CONTRIBUTING, at 'Submitting code'

I think I have found a bug

See CONTRIBUTING, at 'Submitting bugs'

There's something else I want to say

Sure, just add an Issue. Or send an email.

Package dependencies

master branches

Package
beautier
beastier
mauricer
mcbette
tracerer

develop branches

Package
beautier
beastier
mauricer
mcbette
tracerer

Windows

Package	Status
babette_on_windows
beastier_on_windows
beautier_on_windows
mauricer_on_windows
tracerer_on_windows

External links

• BEAST2 GitHub

References

• Bilderbeek, RJC, Laudanno, G, Etienne, RS. Quantifying the impact of an inference model in Bayesian phylogenetics. Methods Ecol Evol. 2020; 00: 1– 8. https://doi.org/10.1111/2041-210X.13514