andersgs

harrietr

An `R` package for various phylogenetic and evolutionary biology data manipulations

kraken-trawl

A tool to help create custom `kraken` databases

beast2_constsites

Update your BEAST2 XML to account for constant sites

db-check

Sanity check your FASTA DB

andersgs.github.io

My page with blogdown

dnabarcodereader

Automate DNA barcode assembly, quality control, and query

measuringNaturalSelection

Code used in the chapter Measuring Natural Selection

meningotype

In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis

microsimr

microsimr

transtreesampler

Sample transmission trees using Outbreaker2

LisSero

In silico serotype prediction for Listeria monocytogenes

beastify

Partition your alignment into distinct codon positions and non-coding positions

bsibayes

An R package for Bayesian analysis of messy epidemiological data

canberra_workshop_day2

DNABarcodes

Automated DNA barcode assembly, quality control, and annotation

flylips

A tool to fit ellipses to Drosophila wings

irelr

An R package that implements the functionality of iRel

mask_plasmid

Generate a quick BED file of a Genbank file to feed into Snippy4 --mask

mig-converter

Convert Migrate-N output from M to Nm

migverify

Check your sequence Migrate-N infiles for monomorphic loci and too many missing data

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mycv

My CV

nullarbor_translate

Translate the Nullarbor output into any format using Jinja2 templates

pop_gen_scripts

A repo for some of my collection of population genetic scripts

py_fasta_validator

A Python extension of the fasta validator

slim-containers

Slimmer container for bioinformatics using conda

thedaggiebinfie

My website

vs-locus

A tool to mine vsearch cluster results for haplotypes

workflows

Community maintained workflows & tools (with examples)