j3551ca's repositories
BEAST-FLOW
Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.
DiVirusity
Quantify viral genetic diversity within hosts from NGS data (paired-end raw reads) without needing to reconstruct full-length haplotypes.
gisflu
Access the GISAID Flu database using Python
Language:Python000
kma-cgmlst
A cgMLST pipeline based on the KMA aligner
Language:NextflowMIT000
phip-flow
A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
Language:NextflowGPL-3.0000
SNPGenie
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Language:PerlGPL-3.0000
Language:PythonNOASSERTION000
WasteFlow
Nextflow pipeline for pathogen surveillance in wastewater
Language:NextflowGPL-3.0000