CALeDNA

caledna

Rails app that handles the data management flow for CALeDNA.

Anacapa

Written by Emily Curd (eecurd@g.ucla.edu), Jesse Gomer (jessegomer@gmail.com), Gaurav Kandlikar (gkandlikar@ucla.edu), Zack Gold (zjgold@ucla.edu), Max Ogden (max@maxogden.com), Lenore Pipes (lpipes@berkeley.edu)and Baochen Shi (biosbc@gmail.com). Assistance was provided by Rachel Meyer (rsmeyer@ucla.edu).

caledna-squarespace

Files for the CALeDNA Squarespace site

eDNA-metadata

Klamath-mountains

Klamath mountains genus interaction data repository compatible with globalbioticinteractions.org

ranacapa

R package for downstream analysis for anacapa eDNA pipeline

crux

Pipeline For Creating eDNA Reference Libraries

eDNA-PCR-Project

Raw and rarefied files for PCR Project

eDNA_Explorer

Code repository for the ecoDASH project

POUR

t-rex-monitor

T-REX job scheduler and metrics visualizer

taxid2taxonpath

converts taxids to taxonpaths

zeta-diversiy

Analysis scripts using data from the CALeDNA consortium

TaxonListToOpenTreePhylogeny

This is a Jupyter Notebook to make phylogenetic trees with the Open Tree of Life from a list of taxa such as those from Anacapa output (CALeDNA format)

trait-scripts

assorted scripts related to species trait data