sung's repositories
offline_dkms_packages
Selection of packages for offline installation of dkms (along with build-essential, make, gcc and etc) on Ubuntu LTS 22.04. Tested on HP Z280
G-E_Halococcus_litoralis_1935
Rough translation of 1935 research paper "Halococcus litoralis, ein obligat halphiler Farbstoffbildner"
genome-helpers
Collection of QoL scripts to help automate microbial assembly and downstream processes
Halococcus_WIP_scripts
Halococcus preprint scripts and full size figures
jupyter_notes
Collection of jupyter notes
phaster_kits
Quality of life improvement scripts for working with https://phaster.ca (PHAge Search Tool Enhanced Release)
polishing_long_reads_note
Data for polishing long reads post
binomica_labs_opentron
Binomica labs Opentron protocols
biocube_setup
Simple setup script for downloading & compiling bio tools on new machine
biosample2species
Quick practice script for looking up sample/species names from a list of biosample accessions
commonplace_letters
Personal gemlogging script and drafts
hg_history
Generating QR code based on each major iteration of reference human genome, starting from hg1 - animated gif output
lire_debout-2012-translation
Rough draft translation of the paper "Lire debout. Le poster comme pratique de lecture dans le monde scientifique" from French to English
naturepoker.github.io
Static page code for the naturepoker git
sanger_check
Quick-and-dirty sanger sequencing fragments checker - takes two (F&R) fasta files, aligns them in clw format and outputs immediately relevant info. Meant for sanger sequenced 16s microbial barcoding results in 100s of base pair range.
sequence-counter
Heavily commented, quick script for processing sequence files for length and basepair composition
Teleagro
A spin on the Telephage suite, this one checks through Agrobacterium genbank records of about 317 reference genomes
Telehalo
A spin on the Tele* scripts, this time processing and comparing protein sequence input against those of Halobacterium genus
TelePlasmid
A script suite for analyzing protein sequences against NCBI Plasmids database