timsainb

noisereduce

Noise reduction in python using spectral gating (speech, bioacoustics, audio, time-domain signals)

tensorflow2-generative-models

Implementations of a number of generative models in Tensorflow 2. GAN, VAE, Seq2Seq, VAEGAN, GAIA, Spectrogram Inversion. Everything is self contained in a jupyter notebook for easy export to colab.

ParametricUMAP_paper

Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep neural networks for representation and semi-supervised learning" (Sainburg, McInnes, Gentner, 2020).

AVGN

A generative network for animal vocalizations. For dimensionality reduction, sequencing, clustering, corpus-building, and generating novel 'stimulus spaces'. All with notebook examples using freely available datasets.

avgn_paper

Latent and generative models of animal vocalizations for songbirds, mice, primates, humans, cetaceans, etc.

vocalization-segmentation

Simple python algorithms for segmenting animal (songbird, mice) vocalizations into notes and syllables using Dynamic Thresholding and Continuity Filtering.

tensorflow-2-feature-visualization-notebooks

Feature and class visualization with deep neural networks in tensorflow. Contains deepdream, style transfer, receptive field visualization, convolutional filter visualization, etc.

curriculum_vitae

My Curriculum Vitae, generated in Python via Jinja from JSON fields into HTML. http://timsainburg.com/pages/cv.html

postdoc_salaries

automutualinformation

Auto Mutual Information (Sequential Mutual Information) for temporal data.

kinectacq

Acquisition from a Kinect rig

multicamera_acquisition

Synchronized machine vision acquisition across multiple cameras using an arduino (Supports FLIR and Basler)

kinect_acquisition_template

LongRangeSequentialOrgPaper

neuroethology_paper_2021

for 2021 current opinions paper

spikesorting-graph-examples

A quick example spikesorting graph to show the spikeinterface team

a-python-package

Example open source Python package with many of the fixings for PyPI publication

ecophys-ecoviz

ibllib

IBL core shared libraries

motionmapperpy

Modified Python 3.0 implementation of MotionMapper (https://github.com/gordonberman/MotionMapper)

multicam-calibration

Multi-camera calibration (intrinsics, extrinsics, and bundle adjustment)

nvidia-patch

This patch removes restriction on maximum number of simultaneous NVENC video encoding sessions imposed by Nvidia to consumer-grade GPUs.

oebinarytools

Analysis pipeline for OpenEphys binary format with RPiOperant/PyOperant audio playback and behavioral interface over HDMI/zmq.

rtd-tutorial

solid-garbanzo

Spike Sorting

spikeinterface

A Python-based module for creating flexible and robust spike sorting pipelines.

spikesorters

Python-based module with spike sorter wrappers and a simple API for running them.

spiketoolkit

Python-based tools for pre-, post-processing, validating, and curating spike sorting datasets.

timsainburg.com

GIthub Pages repo for http://timsainburg.com

umap

Uniform Manifold Approximation and Projection