Paul Gordon's repositories
nanostripper
Strip reads from Oxford Nanopore FAST5 files if they meet certain criteria
bioconda-recipes
Conda recipes for the bioconda channel.
covariants
Real-time updates and information about key SARS-CoV-2 variants, plus the scripts that generate this information.
covid-19-signal
Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.
djerba
Create cancer bioinformatics reports from metadata and workflow output
ivar
iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.
ncov
Nextstrain build for novel coronavirus (nCoV)
ncov-ingest
A pipeline that can fetch the latest nCoV data from GISAID, transform it, and put it on S3
ncov2019-artic-nf
A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019
sars-cov-2-transcriptome
Supplemental code for "the architecture of SARS-CoV-2 transcriptome" paper
SquiggleKit
SquiggleKit: A toolkit for manipulating nanopore signal data
static-museum-audio-guide
A Jekyll static site generator theme for building lightweight audio tours for exhibitions or museums.