Laura Dijkhuizen's repositories
metagenomicspractical
Hands-on workflow for learning metagenomics including DNA mapping, binning, QC and annotation. Answers and example code available in the branch 'example' or on the practical webpage:
lauras_phylogeny_wf
Manual workflows for making phylogenetic trees in jupyter notebooks
Azolla_genus_metagenome
This project aims do describe and explore the metagenomes of fern species of the genus Azolla.
azolla_MYBs
Phylogeny and classification of Azolla filiculoides MYB genes
azolla_phd_thesis
My PhD thesis on the (meta)genomics of the amazing floating fern: Azolla
focus_stacked_timelapse
a bash shell script to make focus stacked timelapses of plants using gphoto2
LAR_phylogeny_gungor-et-al-2020
Phylogenetic tree of LAR and other PIP family enzymes as shown in Güngör et al. 2020. This repository details all code and intermediate files used.
lauralwd.github.io
See rendered website at www.lauradijkhuizen.com
markdown-paper
Write a LaTeX paper in markdown.
Marlin
Marlin is an optimized firmware for RepRap 3D printers based on the Arduino platform. | Many commercial 3D printers come with Marlin installed. Check with your vendor if you need source code for your specific machine.
Nostoc_azollae_pangenomics
Project on the pangenomics of Nostoc azollae, endosymbiont of the Azolla genus